ABOUT THIS RECORDspecies: Populus euphratica
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGAGCGACCTGGAATACATG mismatches: 1 bulges: 1 |
pre-miRNA
ACGATTGTGGAGGATTCCTACAGGAGCGACCTGGAATACATGTGGGCTCCACCCTCCTGGGTTCTCTTGGGCAACATGTGTTCTCAGGTCGCCCCTGCCG
GGCTTTCCTCCATATG
dot-bracket secondary structure
.....(((((((((.(((..((((.((((((((((((((((((..((((.((((....))))......)))).)))))))))).)))))))).))))..)
))...)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACGATTGTGGAGGATTCCTACAGGAGCGACCTGGAATACATGTGGGCTCCACCCTCCTGGGTTCTCTTGGGCAACATGTGTTCTCAGGTCGCCCCTGCCG
GGCTTTCCTCCATATG
dot-bracket secondary structure
.....(((((((((.(((..((((.((((((((((((((((((..((((.((((....))))......)))).)))))))))).)))))))).))))..)
))...)))))))))..
SIMILARITIES| miRBase ptc-MIR398c: 8e-36 PMRD ptc-miR398c: 8e-36 microPC miR398: 3e-38 | UniProt no hits RFAM MIR398: 0.000000000007 | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST046303) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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