miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002123
species: Populus nigra
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GAGGCAGCGGTTCATCGATC

mismatches: 4
bulges: 0

View larger
pre-miRNA
TGGTGGGTTGGGAAGACACTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCTG
CATCCA
GCGCTTCCTTTATTCCCCT


dot-bracket secondary structure
.((.(((..((((((...(..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))
).))).
)..))))))....))))).



SIMILARITIES
miRBase ptc-MIR162a: 7e-52

PMRD ptc-miR162a: 7e-52

microPC miR162: 2e-43
UniProt no hits

RFAM MIR162_2: 7e-43
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record





Liczniki na strone;