miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002128
species: Populus nigra
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

View larger
pre-miRNA
GATTTACTTACCGGCGGTCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTCGACATGACTGGTTGTTGTGGAAA
AAGAAAAGGAAGGAAATAGGAAAAAAAAAACAAAGAATAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCAGAA


dot-bracket secondary structure
.......((((((.((((((((((((((.((((((((((.(((((.((((((((.(.((((....((((((((......)))..)))))..((((.....
.............................)))).)))).))))))))).))))).)))))))))).)))))))))))))))))))).......



SIMILARITIES
miRBase ptc-MIR168a: 2e-65

PMRD ptc-miR168a: 2e-65

microPC miR168: 5e-60
UniProt no hits

RFAM MIR168: 2e-75
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;