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ABOUT THIS RECORD

ID: MNEST002150
species: Populus tremula
miRNA family: MIRf655
source: miRNEST

Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGCAGGGCAATTCTCCCTTG

miRNA*
 AAGGAGGATAAAGCCCTGTTATT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 TCAAGTAACTGTGGAATCGAATGGCAGGGCAATTCTCCCTTGGCAAAACAGAAATATGCAGGCATTTATTTCCATGTTCTGTTTGCCAAAGGAGGATAAA
GCCCTGTTATTCTTTAGCCATAAATGATA

dot-bracket secondary structure
.........(((((....((((((((((((.(((((((.((((((((.(((((.((((.(((......))).))))))))))))))))).)))))))...
)))))))))))).....))))).......


SIMILARITIES
miRBase ptc-MIR399f: 4e-50

PMRD ptc-miR399f: 4e-50

microPC miR399: 0.0004		UniProt no hits

RFAM mir-399: 2e-49		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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