ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
GGAAAGAGGGATTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCT
GTGAGGCAAATTATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACTCCGCCGCCGCCG
dot-bracket secondary structure
((.....(((.(((...((((((.((((((((.(((((.((((((((((.(((((.((((((((....((((.(((((..((((((((......))))))
))..))))).((.....)))))).)))))))).))))).)))))))))).))))).))))))))))))))))).)))....))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAAAGAGGGATTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCT
GTGAGGCAAATTATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACTCCGCCGCCGCCG
dot-bracket secondary structure
((.....(((.(((...((((((.((((((((.(((((.((((((((((.(((((.((((((((....((((.(((((..((((((((......))))))
))..))))).((.....)))))).)))))))).))))).)))))))))).))))).))))))))))))))))).)))....))....
SIMILARITIES| miRBase ptc-MIR168b: 2e-68 PMRD ptc-miR168b: 2e-68 microPC miR168: 2e-62 | UniProt no hits RFAM MIR168: 2e-78 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST045088) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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