miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002162
species: Populus tremula
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0

View larger
pre-miRNA
GATGAGTGATGGATTATGGAGTGGAGCTCCTTGAAGTCCAATAGAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACC
ATCTGTTATTTTGACGGGCCTGCGGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTGGATCTTTTTTTGGATTGAAGGGAGCTCTAAACCTTTGATC
TTTTCAGCC


dot-bracket secondary structure
..((((....((((((.((..(((((((((((..(((((((.(((((.(((.(((((((((...(((((.(((((.((((....((.(((.(((.(((..
...........))).))).))).))....)))).))))).)))))..)))))))..)).))).))))).)))))))..)))))))))))..))..)))))
).))))...



SIMILARITIES
miRBase ptc-MIR159b: 2e-81

PMRD ptc-miR159b: 2e-81

microPC miR159: 1e-79
UniProt no hits

RFAM MIR159: 4e-67
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;