miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002168
species: Populus tremula x Populus alba
miRNA family: MIRf1101
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGGGAGAAGCTGACAGATGA

miRNA*
GGCTTGTTAGCATCTTCTCATT

mismatches: 2
bulges: 1

View larger
pre-miRNA
ATGACAAATCTTGGGGAGAAGCTGACAGATGAGGAGGTTGATGAGATGATCCGTGAGGCTGATGTGGATGGTGATGGTCAGATCAACTACGAAGAGTTTG
CCAAAGTTATGATGGCCAAGTGAGGTTTACTCACCCAAAACCCAAAAACCAATGCATAAAAACAAAAAAGAGAGACAGGGCAAATAAGTTTGATGAGAAT
TCTATTTCCCAATTAGGACATCTTCATTTGGTGTTATTAGCTTCNCCTGGGTTGTTTGTTCTGNNGTTTGCATTATTTTGTGGNGCTTTTCATTAATATC
TAATCGCTTGCTCTGCTTTTTGTCCACTAACTTGGCTTGTTAGCATCTTCTCATTGANGG


dot-bracket secondary structure
........((.((((((((.((((((((.((((..(((.(((((((..(((.((...)).)))(((((.((((((....((((.......(((((((.((
(.(((((.(((..(((..((((((.....))))).(((((((((.........((.(((.((((..(((((((....(((.((((((((((.....))))
).))))))))..........))))..)))..)))).)))))......)))))..))))...)...)))..))).))))))))..)))))))......)))
).))))))...))))).))))))).)))..))))..)))))))).))))))))..))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P04464|CALM_WHEAT: 0.000000000000002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record





Liczniki na strone;