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ABOUT THIS RECORD
ID:
MNEST002168
species:
Populus tremula x Populus alba
miRNA family:
MIRf1101
source:
miRNEST
Taxonomy by NCBI:
Populus tremula x Populus alba
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGGGAGAAGCTGACAGATGA
miRNA*
GGCTTGTTAGCATCTTCTCATT
mismatches:
2
bulges:
1
View larger
pre-miRNA
ATGACAAATCT
TGGGGAGAAGCTGACAGATGA
GGAGGTTGATGAGATGATCCGTGAGGCTGATGTGGATGGTGATGGTCAGATCAACTACGAAGAGTTTG
CCAAAGTTATGATGGCCAAGTGAGGTTTACTCACCCAAAACCCAAAAACCAATGCATAAAAACAAAAAAGAGAGACAGGGCAAATAAGTTTGATGAGAAT
TCTATTTCCCAATTAGGACATCTTCATTTGGTGTTATTAGCTTCNCCTGGGTTGTTTGTTCTGNNGTTTGCATTATTTTGTGGNGCTTTTCATTAATATC
TAATCGCTTGCTCTGCTTTTTGTCCACTAACTT
GGCTTGTTAGCATCTTCTCATT
GANGG
dot-bracket secondary structure
........((.
((((((((.((((((((.(((
(..(((.(((((((..(((.((...)).)))(((((.((((((....((((.......(((((((.((
(.(((((.(((..(((..((((((.....))))).(((((((((.........((.(((.((((..(((((((....(((.((((((((((.....))))
).))))))))..........))))..)))..)))).)))))......)))))..))))...)...)))..))).))))))))..)))))))......)))
).))))))...))))).))))))).)))..)))
)..)))))))).))))))))..
))...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|P04464|CALM_WHEAT: 0.000000000000002
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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