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ABOUT THIS RECORD

ID: MNEST002170
species: Populus tremula x Populus alba
miRNA family: MIRf1215
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTGGTCATTTTGTTTATAGG

miRNA*
TGTGAACATCTTGACCAGGGG

mismatches: 3
bulges: 0

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pre-miRNA
ACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCAAGGACTTCTGGGAANAGCTTTCTTTTGCCACAATGCAGGACAGATGTATTATACGT
GTCTGATCCCTGTGAACATCTTGACCAGGGGGATNAAGG


dot-bracket secondary structure
.........((((((((((...((((((((((....(((.(((.(((...)))..)))..)))...((((((......))))))((((((((...)))).
.))))...))))))))))...))))))))))........



SIMILARITIES
miRBase no hits

PMRD ptc-miRf11908-akr: 6e-65

microPC no hits
UniProt sp|Q9LF38|EDL1_ARATH: 0.000000000000001

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
Source sequences
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