miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST002173
species:
Populus tremula x Populus alba
miRNA family:
MIRf1133
source:
miRNEST
Taxonomy by NCBI:
Populus tremula x Populus alba
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAAGATCATCCCTCATGCTGT
miRNA*
AGTTCAGGGGGATGAGCTTGGA
mismatches:
3
bulges:
1
View larger
pre-miRNA
CATTGGGTCGACCATTCGAGA
CAAGATCATCCCTCATGCTGT
GTCCTGGTTTACTGGGGAGGC
AGTTCAGGGGGATGAGCTTGGA
TTGGATGATGATGAT
GGC
dot-bracket secondary structure
((((..((((..(((((((..
((((.(((((((((..(((((
.((((((....))))))..))
)))...))))))))).))))..
))))))).)))))))
)..
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11461-akr
:
3e-35
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record