ABOUT THIS RECORDspecies: Populus tremula x Populus alba
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCATGCGATCCCTTAGGAAT mismatches: 1 bulges: 1 |
pre-miRNA
TGTTATCAAATCCTTAGTGCAGTTGGAGTGTTCCAAAGGGATCGCATTGATCTAATGACTTTCGATGTCTATATGATGTTAATGTTTAGTCATTTCATTG
GATCATGCGATCCCTTAGGAATTTTCCAGCAAATAGCTCTAAATTTTCAC
dot-bracket secondary structure
.............((((.((.(((((((.(((((.((((((((((((.((((((((((.....((((.(((.((.........)).))).))))))))))
)))))))))))))))).))))).))))))).....)).))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTTATCAAATCCTTAGTGCAGTTGGAGTGTTCCAAAGGGATCGCATTGATCTAATGACTTTCGATGTCTATATGATGTTAATGTTTAGTCATTTCATTG
GATCATGCGATCCCTTAGGAATTTTCCAGCAAATAGCTCTAAATTTTCAC
dot-bracket secondary structure
.............((((.((.(((((((.(((((.((((((((((((.((((((((((.....((((.(((.((.........)).))).))))))))))
)))))))))))))))).))))).))))))).....)).))))........
SIMILARITIES| miRBase ptc-MIR393d: 1e-53 PMRD ptc-miR393d: 1e-53 microPC miR393: 3e-45 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR393 from microPC (MNEST046398) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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