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ABOUT THIS RECORD

ID: MNEST002183
species: Populus tremula x Populus alba
miRNA family: MIRf126
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTCACTCTTACAGTGCCCAT

miRNA*
GGCCATTGTAAGAGTAGAAGGA

mismatches: 1
bulges: 1

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pre-miRNA
TAGTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGT
ATTTCACTCTTACAGTGCCCATTGATTAAGATGGTATAATG


dot-bracket secondary structure
..((((((.(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).))).
.)))))))))))))))).))))))))))))))).)))))).



SIMILARITIES
miRBase ptc-MIR475a: 4e-66

PMRD ptc-miRf10050-akr: 2e-74

microPC miR475: 1e-62
UniProt no hits

RFAM MIR475: 5e-38
most similar mature miRNAs

Identical with: miR475 from microPC (MNEST045347)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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