ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf235
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTGGTAAGAGATTGGGATAA miRNA* GTCTCAGGTTCGAGCCCTAG mismatches: 5 bulges: 1 |
pre-miRNA
GGTGGTGGCCTAGTGGTAAGAGATTGGGATAAAGAGGTTTGCTCACTCTATGGTCTCAGGTTCGAGCCCTAGGTTGCTCA
dot-bracket secondary structure
...((((((((((.(((..(((.(((((((..((((.........))))...))))))).)))..)))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTGGTGGCCTAGTGGTAAGAGATTGGGATAAAGAGGTTTGCTCACTCTATGGTCTCAGGTTCGAGCCCTAGGTTGCTCA
dot-bracket secondary structure
...((((((((((.(((..(((.(((((((..((((.........))))...))))))).)))..)))))))))))))..
SIMILARITIES| miRBase no hits PMRD ptc-miRf12159-akr: 2e-17 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
