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ABOUT THIS RECORD
ID:
MNEST002190
species:
Populus tremula x Populus tremuloides
miRNA family:
miR168a
source:
miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCCGCCTTGCATCAACTGAAT
miRNA*
TCGCTTGGTGCAGGTCGGGAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
CGGCGGTCTCTAAT
TCGCTTGGTGCAGGTCGGGAA
CTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAGA
AAGAGAATTGGAT
CCCGCCTTGCATCAACTGAAT
CGGAGACCGCG
dot-bracket secondary structure
..(((((((((.((
(((.((((((((((.(((((.
((((((((....((((.(((((..((((((((......))))))))..))))).((.....))))
)).)))))))).)
)))).)))))))))).)))))
.))))))))).
SIMILARITIES
miRBase
ptc-MIR168b
:
2e-68
PMRD
ptc-miR168b
:
2e-68
microPC
miR168
:
1e-62
UniProt
no hits
RFAM
MIR168: 1e-72
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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