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ABOUT THIS RECORD
ID:
MNEST002193
species:
Populus tremula x Populus tremuloides
miRNA family:
MIR168
source:
miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA
miRNA*
CCCGCCTTGCATCAACTGAAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
CCGGCGGTCTCTGAT
TCGCTTGGTGCAGGTCGGGAA
CTGATTCGGCGATTTGATTGCCAGCTGGCTGGACATGACTGGTTGTTATGGAAAAAGAAAAGGA
AGGAAACAGGAAAAAACAAAGAATAGCGAATTGGAT
CCCGCCTTGCATCAACTGAAT
CGGAGGCCGCGG
dot-bracket secondary structure
...((((((((((((
(((.((((((((((.(((((.
(((((((((((((...)))))).((((.((........(((.((.((...............))
.))...)))..........))..))))))))))).)
)))).)))))))))).)))))
))))))))))..
SIMILARITIES
miRBase
ptc-MIR168a
:
8e-34
PMRD
pts-miR168b
:
8e-34
microPC
miR168
:
7e-28
UniProt
no hits
RFAM
MIR168: 1e-35
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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