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ABOUT THIS RECORD

ID: MNEST002193
species: Populus tremula x Populus tremuloides
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

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pre-miRNA
CCGGCGGTCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGCTGGCTGGACATGACTGGTTGTTATGGAAAAAGAAAAGGA
AGGAAACAGGAAAAAACAAAGAATAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGG


dot-bracket secondary structure
...(((((((((((((((.((((((((((.(((((.(((((((((((((...)))))).((((.((........(((.((.((...............))
.))...)))..........))..))))))))))).))))).)))))))))).)))))))))))))))..



SIMILARITIES
miRBase ptc-MIR168a: 8e-34

PMRD pts-miR168b: 8e-34

microPC miR168: 7e-28
UniProt no hits

RFAM MIR168: 1e-35
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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