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ABOUT THIS RECORD

ID: MNEST002198
species: Populus tremula x Populus tremuloides
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG

miRNA*
GGTCATCTAGCAGCTTCAAT

mismatches: 1
bulges: 1

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pre-miRNA
TCAATTTGTCTAATATGTTGGTTTGAGAGGTTGAAGCTGCCAGCATGATCTGGTAATGAACGTGTTACTCTCATTTATATATATATTAACATTAATCTTA
TAGCAGTATCTGTAGGTAGAAAAAATTTAATGTTGTCAAAGATATATACTGAATCGTGGTTGCTAGGTTTGTATTACTAGTTTAGGATGCATGTTTTTGA
TCTTATGATGATCAATTGCTTGTGAGTTCCTAGGCAATGAAAACAGAATATATACTGGTGATTTTTCCCAGTAAAATTGTCGAGAAAAGGGAATTGCACT
AATAGGGAAGACGCATAGGTAAACTTGTATCTAAATGGTATATGTATNTTCCAGGCAAAAGGGTAGAAACCTAATNAGAAACTAGCTTGAACTCAGAGCT
ATAAAAGTATATGGTTCCATCAGGTCATCTAGCAGCTTCAATCACTCACTCACAAACAGC


dot-bracket secondary structure
...............((((.((.((((.((((((((((((.((.(((((((((((((((...........)))))(((((((....(((((((((.((((
(((......)))))))..........)))))))))......)))))))(((..((....(((((.((..(((((.((((.((..(((((((.((((((((
((.......))))))..(((((((..((((((.(((((.......((..((.((((((.((....))))))))..))..))...........)))))...
..)))))).....))))))))))).))))))))).)))))))))......)).)))))..)).))).((((...........((((((.......)))))
)...........))))..)))))))))))).)))))))))))).))))...)).))))..



SIMILARITIES
miRBase gma-MIR167c: 0.000000000002

PMRD ppl-miR167b: 0

microPC miR167: 0.00002
UniProt no hits

RFAM MIR167_1: 0
most similar mature miRNAs

Identical with: pts-miR167 from PMRD (MNEST054373)

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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