ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGGTTCAATAAAGCTGTGG miRNA* ACAGCTTTCTTGAACTGCACC mismatches: 1 bulges: 0 |
pre-miRNA
ATGTGACCCCCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCATATGACATTGTA
TTCATTTTTGCTGCGGTTCAATAAAGCTGTGGGAAGATACAAACAGGATCAAA
dot-bracket secondary structure
...(((.((..((((((((.((((((((((((.((((((((((.....((((...(((.((((((((((((((.....).)))))).....)))))))..
..))).)))).)))))))))).)))))))))))).))))))))..)).)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATGTGACCCCCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCATATGACATTGTA
TTCATTTTTGCTGCGGTTCAATAAAGCTGTGGGAAGATACAAACAGGATCAAA
dot-bracket secondary structure
...(((.((..((((((((.((((((((((((.((((((((((.....((((...(((.((((((((((((((.....).)))))).....)))))))..
..))).)))).)))))))))).)))))))))))).))))))))..)).)))..
SIMILARITIES| miRBase ptc-MIR396b: 2e-68 PMRD ptc-miR396b: 2e-68 microPC miR396: 9e-58 | UniProt no hits RFAM MIR396: 5e-69 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
