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ABOUT THIS RECORD

ID: MNEST002220
species: Populus trichocarpa x Populus nigra
miRNA family: MIRf109
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTCCTCTTCTTCTTGCTGTT

miRNA*
CAGCCTGAGAGAGGGAAAC

mismatches: 4
bulges: 2

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pre-miRNA
GAGCATGAAAGACAGCCTGAGAGAGGGAAACTACAAAATGTTACACGGCAAAGCTCAGAATTTCCATATGAAGAAGGCTCCTGATGTTACATCATGGCAA
AGCTAATTCCTGGTAGAGAAGTATGAACAAACATTATGATTATTTTTTTGATGAACCGAAACCGCCAAACCCCATCATAGCTGCAATATCAGGATCAATA
TCAGCTTCTTCCTCCTCTGCTGCCTTCTCTTTCTTTTTCTCTTTCTTTCTTTCTCGGCGTTGACGCTTGCGTTCCTCCTCTTCTTCTTGCTGTTTTAAGA
TCC


dot-bracket secondary structure
........((((((((..(((((((((.(((....((.(((((..(((.((((...((((.........(((((((((...(((((...))))).(((((
((((.((((((((((....(((............((((((......((((.((.........)).))))....)))))))))....)))))))).....)
).)))))..........)))))))))))...)).........))))..)))).)))....))))).))..)))..)))))))..))..))))))))....
...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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