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ABOUT THIS RECORD

ID: MNEST002222
species: Populus trichocarpa x Populus nigra
miRNA family: MIR1447
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGAATTGCAGTGCCCTGATT

miRNA*
TCAAGGCACTGCAATTCTGAC

mismatches: 1
bulges: 0

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pre-miRNA
ACAAAGCCCAAATCAAGGCACTGCAATTCTGACTAATAAATGATATGTAAATTTCAAACGTCTAGCATCGCCACTTGCCAACAGACATTTTAGAATTGCA
GTGCCCTGATT
AGGGCCTCC


dot-bracket secondary structure
.....((((.(((((.((((((((((((((((..(((...(((.((....)).)))...((((.(((........)))....))))))))))))))))))
))))).)))))
.))))....



SIMILARITIES
miRBase ptc-MIR1447: 2e-52

PMRD ptc-miRf11238-akr: 3e-54

microPC miR1447: 9e-39
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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