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ABOUT THIS RECORD

ID: MNEST002223
species: Populus trichocarpa x Populus nigra
miRNA family: MIRf1239
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTCCAGGCTCTTTTCACTGA

miRNA*
GGTGGATAGAGCTTGGAGGAA

mismatches: 4
bulges: 0

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pre-miRNA
CTCCGTACATAATTCCAGGCTCTTTTCACTGAGCACTGAAGAGGAACGATTAAATAGAGGATGGACGTATATATTTTCTTTCTCCATTGATTCTTTGGGA
CCTTCAGGACTGGTGGATAGAGCTTGGAGGAAGCTCCAGC


dot-bracket secondary structure
.............((((((((((.(((((((....((((((..(((.((((((...(((((.(((.((....)).))).)))))..)))))).)))....
.))))))...))))))).))))))))))(((...)))...



SIMILARITIES
miRBase no hits

PMRD ptc-miRf12015-akr: 1e-47

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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