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ABOUT THIS RECORD
ID:
MNEST002223
species:
Populus trichocarpa x Populus nigra
miRNA family:
MIRf1239
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTCCAGGCTCTTTTCACTGA
miRNA*
GGTGGATAGAGCTTGGAGGAA
mismatches:
4
bulges:
0
View larger
pre-miRNA
CTCCGTACATA
ATTCCAGGCTCTTTTCACTGA
GCACTGAAGAGGAACGATTAAATAGAGGATGGACGTATATATTTTCTTTCTCCATTGATTCTTTGGGA
CCTTCAGGACT
GGTGGATAGAGCTTGGAGGAA
GCTCCAGC
dot-bracket secondary structure
...........
..((((((((((.(((((((.
...((((((..(((.((((((...(((((.(((.((....)).))).)))))..)))))).)))....
.))))))...)
)))))).))))))))))(((.
..)))...
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf12015-akr
:
1e-47
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record