ABOUT THIS RECORDspecies: Populus trichocarpa x Populus nigra
miRNA family: MIRf1239
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTCCAGGCTCTTTTCACTGA miRNA* GGTGGATAGAGCTTGGAGGAA mismatches: 4 bulges: 0 |
pre-miRNA
CTCCGTACATAATTCCAGGCTCTTTTCACTGAGCACTGAAGAGGAACGATTAAATAGAGGATGGACGTATATATTTTCTTTCTCCATTGATTCTTTGGGA
CCTTCAGGACTGGTGGATAGAGCTTGGAGGAAGCTCCAGC
dot-bracket secondary structure
.............((((((((((.(((((((....((((((..(((.((((((...(((((.(((.((....)).))).)))))..)))))).)))....
.))))))...))))))).))))))))))(((...)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTCCGTACATAATTCCAGGCTCTTTTCACTGAGCACTGAAGAGGAACGATTAAATAGAGGATGGACGTATATATTTTCTTTCTCCATTGATTCTTTGGGA
CCTTCAGGACTGGTGGATAGAGCTTGGAGGAAGCTCCAGC
dot-bracket secondary structure
.............((((((((((.(((((((....((((((..(((.((((((...(((((.(((.((....)).))).)))))..)))))).)))....
.))))))...))))))).))))))))))(((...)))...
SIMILARITIES| miRBase no hits PMRD ptc-miRf12015-akr: 1e-47 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
