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ABOUT THIS RECORD
ID:
MNEST002226
species:
Populus trichocarpa x Populus nigra
miRNA family:
MIRf445
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCGATGCAGCATCATCAAGAT
miRNA*
CTTGATGATGCTCCACCCGCA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TCCTTTTGTGTTGTATAGTCGTTTATTG
CCGATGCAGCATCATCAAGAT
TCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAGAGATTTAA
CTCTAACATCTCCGGCCGTGCATTTGCATGTGAAT
CTTGATGATGCTCCACCCGCA
AACAACGATTGTCAATATTTCCATG
dot-bracket secondary structure
.......((((((.(((((((((..(((
(...((.((((((((((((((
(((((((.(((((....))))).)).)))..(((.......((((......
))))....))).....(((((....))))).))))
)))))))))))).))...)))
)..))))))))))))))).......
SIMILARITIES
miRBase
ptc-MIR172b
:
5e-66
PMRD
ptc-miRf10081-akr
:
3e-70
microPC
miR172
:
0.000002
UniProt
no hits
RFAM
mir-172: 2e-65
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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