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ABOUT THIS RECORD

ID: MNEST002227
species: Populus trichocarpa x Populus nigra
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAATCTTGATGATGCTCCAC

miRNA*
GCAGCATCATCAAGATTCTCA

mismatches: 3
bulges: 0

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pre-miRNA
CCTTTTGTGTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAGAGATTTAAC
TCTAACATCTCCGGCCGTGCATTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAACGATTGTCAATATTTCCAT


dot-bracket secondary structure
......((((((.(((((((((..((((...((.(((((((((((((((((((((.(((((....))))).)).)))..(((.......((((......)
)))....))).....(((((....))))).)))))))))))))))).))...))))..)))))))))))))))......



SIMILARITIES
miRBase ptc-MIR172b: 5e-66

PMRD ptc-miRf10081-akr: 3e-70

microPC miR172: 0.000002
UniProt no hits

RFAM mir-172: 2e-65
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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