miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST002228
species:
Populus trichocarpa x Populus nigra
miRNA family:
MIR838
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTCTTCTACTTCTTCCATT
miRNA*
GGAGAGGGAGAGGGAGAGA
mismatches:
1
bulges:
2
View larger
pre-miRNA
CAGCCTCAAGC
TTTTCTTCTACTTCTTCCATT
TCTTTTTTCTGTGATGATTTTGAATCCGATCTCCAGGCAATGTAAAGTAGCCGCAGGCCAAAAAATGC
ATAAAGAACGGTGGCTGCACTATTTGTATGCTTCCTTGAAATTAAATTTGGCACGATTCTACCAAGTCCAGTAGAAAGTACCTAAATGACATGCACAACA
GCTTTAAGCTTCACCAACATTGAGAATAAGAAAAGTTCAGTGTAGTTGCTGGCTGGACCATTCCATTCAATGCCTTGCAGTGTCAGAAGAAAGAAA
GGAG
AGGGAGAGGGAGAGA
GAGAACAA
dot-bracket secondary structure
....(((...(
(((((((((.(((((((..((
(((((((((((...((...((((((..((..(((.(((.((.....)).)))(((.((((((....((
(((..(((.((((....)))).))).)))))...............))))))....((((((........)))))).((.........)).))).....(
(((...(((...((..((((((((...........)))))))).)).))))))))))....)).)))))).......))....)))))))))))))
))))
))).)))))))))).
))).....
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q6ZIB9|GDT14_ORYSJ: 6e-16
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record