ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCCCTCCATCCCAAAATAA miRNA* ATTTTGGAACGGATGGAGTA mismatches: 4 bulges: 0 |
pre-miRNA
TCGTCCGTAGTGCTCCCTCCATCCCAAAATAAGGTTGTACTAAGGTTGAGACATTTATTTTGGGACGGACTTATTTTGGAACGGATGGAGTA
dot-bracket secondary structure
...........(((((.(((...((((((((((.((((.(((((((.((....)).))))))).)))).))))))))))...))).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGTCCGTAGTGCTCCCTCCATCCCAAAATAAGGTTGTACTAAGGTTGAGACATTTATTTTGGGACGGACTTATTTTGGAACGGATGGAGTA
dot-bracket secondary structure
...........(((((.(((...((((((((((.((((.(((((((.((....)).))))))).)))).))))))))))...))).))))).
SIMILARITIES| miRBase far-MIR437: 0.00002 PMRD hpr-miR1120: 0.0003 microPC miR1439: 0.0003 | UniProt no hits RFAM MIR1122: 0.0000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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