ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCGTATCTAGCC miRNA* CTAGATACGGATGTACCTAAC mismatches: 3 bulges: 0 |
pre-miRNA
AACCGTCATATATTCTATTACCTCCGTCCCAAATTACTTGTCTTAGATTTCTCTAGATACGGATGTACCTAACAATAAAACGTGTCTAGATACATCCGTA
TCTAGCCAAATCTAAGACAGCTAATTCGGGACTGAGGGAGTATGTCTGATCTGGCT
dot-bracket secondary structure
..((((((.((((.((....((((.(((((.(((((.(((((((((((((..(((((((((((((((.((((((........))).))).))))))))))
)))))..))))))))))))).))))).))))).)))).)).)))).)))..)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACCGTCATATATTCTATTACCTCCGTCCCAAATTACTTGTCTTAGATTTCTCTAGATACGGATGTACCTAACAATAAAACGTGTCTAGATACATCCGTA
TCTAGCCAAATCTAAGACAGCTAATTCGGGACTGAGGGAGTATGTCTGATCTGGCT
dot-bracket secondary structure
..((((((.((((.((....((((.(((((.(((((.(((((((((((((..(((((((((((((((.((((((........))).))).))))))))))
)))))..))))))))))))).))))).))))).)))).)).)))).)))..)))..
SIMILARITIES| miRBase tae-MIR1122: 2e-18 PMRD tae-miR1122: 2e-18 microPC miR1122: 0.0000001 | UniProt no hits RFAM MIR1122: 4e-23 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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