ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCCCATAATAG miRNA* ATTATGGGACGGAAGGAGTAG mismatches: 2 bulges: 0 |
pre-miRNA
TCTGAGTTCAGAGCTACTCCCTCCGTCCCATAATAGTGTCAAAAAAGCTCTTATATTATGGGACGGAAGGAGTAGTTCTATTGAGCA
dot-bracket secondary structure
.....(((((((((((((((.((((((((((((((..((.......)).....)))))))))))))).))))))))))...))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTGAGTTCAGAGCTACTCCCTCCGTCCCATAATAGTGTCAAAAAAGCTCTTATATTATGGGACGGAAGGAGTAGTTCTATTGAGCA
dot-bracket secondary structure
.....(((((((((((((((.((((((((((((((..((.......)).....)))))))))))))).))))))))))...))))).
SIMILARITIES| miRBase tae-MIR1120: 0.00000007 PMRD tae-miR1120: 0.00000007 microPC miR1436: 0.00000007 | UniProt no hits RFAM MIR1122: 0.000000000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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