ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCGAAAAAG miRNA* TTTTCGGACGGAGGGAGTATG mismatches: 0 bulges: 0 |
pre-miRNA
TTGGACCTTAGTACTCCCTCCGTCCGAAAAAGATTGTCTCTCAAATGGATGTATCTAGCACCAAGTTAGTGCTAGATACATCCATTTGAGGCACAAGCTT
GGGACAAGCTTTTTCGGACGGAGGGAGTATGTGCTAATA
dot-bracket secondary structure
((((......((((((((((((((((((((((.((((((((((((((((((((((((((((.......)))))))))))))))))))))(((....))).
))))))).))))))))))))))))))))))...))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGACCTTAGTACTCCCTCCGTCCGAAAAAGATTGTCTCTCAAATGGATGTATCTAGCACCAAGTTAGTGCTAGATACATCCATTTGAGGCACAAGCTT
GGGACAAGCTTTTTCGGACGGAGGGAGTATGTGCTAATA
dot-bracket secondary structure
((((......((((((((((((((((((((((.((((((((((((((((((((((((((((.......)))))))))))))))))))))(((....))).
))))))).))))))))))))))))))))))...))))..
SIMILARITIES| miRBase tae-MIR1133: 1e-41 PMRD tae-miR1133: 1e-41 microPC miR1133: 0.0004 | UniProt no hits RFAM MIR1122: 3e-42 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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