miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002284
species: Pseudoroegneria spicata
miRNA family: MIR1122
source: miRNEST

Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCCGAAAAAG

miRNA*
TTTTCGGACGGAGGGAGTATG

mismatches: 0
bulges: 0

View larger
pre-miRNA
TTGGACCTTAGTACTCCCTCCGTCCGAAAAAGATTGTCTCTCAAATGGATGTATCTAGCACCAAGTTAGTGCTAGATACATCCATTTGAGGCACAAGCTT
GGGACAAGCTTTTTCGGACGGAGGGAGTATGTGCTAATA


dot-bracket secondary structure
((((......((((((((((((((((((((((.((((((((((((((((((((((((((((.......)))))))))))))))))))))(((....))).
))))))).))))))))))))))))))))))...))))..



SIMILARITIES
miRBase tae-MIR1133: 1e-41

PMRD tae-miR1133: 1e-41

microPC miR1133: 0.0004
UniProt no hits

RFAM MIR1122: 3e-42
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;