miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST002302
species:
Quercus petraea
miRNA family:
MIR2673
source:
miRNEST
Taxonomy by NCBI:
Quercus petraea
Quercus
Fagaceae
Fagales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTCTTCCTCTTCCTCATCTT
miRNA*
GAAGAAGAAGAAGAAGAAGAAG
mismatches:
3
bulges:
1
View larger
pre-miRNA
CATCCTCCTCCTCCTCTTTCT
TCTCTTCCTCTTCCTCATCTT
CTTCCGGAGGATCATATGGCAATGGAGGTGGTAATGGTGTTTTCATAGGGCTAAACTG
GGGGAATATATCAGGTCTACGCCCTGGTTTTGGCCTCTCCCACTCGATGGGGAAATCGAGAGGATTACGGCGCGTGAGTTTCTCTTCATCGGGAGCCATA
CGGACCACTTGCCTCTTTGCCCTCAAAAGATGAGTTGAAACCACGCGCTGAGAATCGAACATTGGAATTGAGCATCTGCAGCGAACGAAGCACGCGTCGC
CCACA
GAAGAAGAAGAAGAAGAAGAAG
AAGATGGGGATGAAGTCGAAG
dot-bracket secondary structure
........((.(((((..(((
(((((((.(((((.((.((((
((..((((...(((.....(((((.((.((((.((((.....))))...))))..))(
(((((.((.((((((.......))))))..))...)))))).((((((......))))))..((((.(((((((((.(((((..((((((..(((...((
.(((.........))).))..)))....))))))..))))))))))))))..))))...)))))....)))...))))..((((.((.......))))))
....)
))))).)).))))).)))).))
)))).))))).))........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record