ABOUT THIS RECORDspecies: Quercus petraea
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Quercus petraea Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCGTCATCTTCT miRNA* AAGAGGCCGGTGTGATGAAG mismatches: 4 bulges: 1 |
pre-miRNA
AGTCAGCGTCTTCATCATCATCGTCATCTTCTTCATCTGATGAGGACGAGCAAGAGGCCGGTGTGATGAAGTTTGTGAA
dot-bracket secondary structure
.....(((.((((((((.(((((...((((.(((.(((.....))).))).))))...)))))))))))))..)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTCAGCGTCTTCATCATCATCGTCATCTTCTTCATCTGATGAGGACGAGCAAGAGGCCGGTGTGATGAAGTTTGTGAA
dot-bracket secondary structure
.....(((.((((((((.(((((...((((.(((.(((.....))).))).))))...)))))))))))))..)))...
SIMILARITIES| miRBase ath-MIR414: 0.00006 PMRD ath-miR414: 0.00006 microPC no hits | UniProt no hits RFAM mir-598: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
