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ABOUT THIS RECORD
ID:
MNEST002311
species:
Quercus petraea
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Quercus petraea
Quercus
Fagaceae
Fagales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTCTTCATCATCATCATCT
miRNA*
AAATTGATGTTGAGGATGAG
mismatches:
5
bulges:
1
View larger
pre-miRNA
GCTTAACTCCT
TTTTCTTCATCATCATCATCT
TCATCACCACCTCCTTCTCCTTCAGCCCCTAAATGGTCATGCAAGGCCTGCACTTTCTTGAACCTTTA
CAAGAGCGGAAGCTGTGATGTCTGTGGCACGAGGGCCTCTGTGTCTTCCTTGTCCAGCTTTGAGGATTTGAAAG
AAATTGATGTTGAGGATGAG
GGTTTG
GA
dot-bracket secondary structure
.((.(((.(((
(..((((((.(((((...(((
(..(((.....(((((..(((((((((.......)))..)).)))).((((....(((((........
)))))))))((((((.((((.....((((((((...))).))))).....)))))))))).)))))..))))))
)...))))).)))))).)))
)))).)
).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-598: 0.00001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record