miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST002311
species: Quercus petraea
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Quercus petraea Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTCTTCATCATCATCATCT

miRNA*
AAATTGATGTTGAGGATGAG

mismatches: 5
bulges: 1

View larger
pre-miRNA
GCTTAACTCCTTTTTCTTCATCATCATCATCTTCATCACCACCTCCTTCTCCTTCAGCCCCTAAATGGTCATGCAAGGCCTGCACTTTCTTGAACCTTTA
CAAGAGCGGAAGCTGTGATGTCTGTGGCACGAGGGCCTCTGTGTCTTCCTTGTCCAGCTTTGAGGATTTGAAAGAAATTGATGTTGAGGATGAGGGTTTG
GA


dot-bracket secondary structure
.((.(((.((((..((((((.(((((...((((..(((.....(((((..(((((((((.......)))..)).)))).((((....(((((........
)))))))))((((((.((((.....((((((((...))).))))).....)))))))))).)))))..)))))))...))))).)))))).))))))).)
).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-598: 0.00001
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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