ABOUT THIS RECORDspecies: Quercus robur
miRNA family: MIR477
source: miRNEST
Taxonomy by NCBI:
Quercus robur Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCTTCTTCAATGGCTTCTTT miRNA* AGAGTATTTGAAGGAAATTG mismatches: 4 bulges: 1 |
pre-miRNA
CTGTGCAGGGAGTCTTCTTCAATGGCTTCTTTGGTGTATATCTTCTCTCCCCCAAACTGGCCCATAGAATTGTTGGTTACCTGGAGGAGGAAGCAGTATA
CTCATATACAGAGTATTTGAAGGAAATTGATAGTGGT
dot-bracket secondary structure
((.....)).(((.((((((((..(((.((.((..((((((((((.((((.(((...(((((.(((....))).)))))..))).))))))))..)))))
).....)).)))))..)))))))).))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGTGCAGGGAGTCTTCTTCAATGGCTTCTTTGGTGTATATCTTCTCTCCCCCAAACTGGCCCATAGAATTGTTGGTTACCTGGAGGAGGAAGCAGTATA
CTCATATACAGAGTATTTGAAGGAAATTGATAGTGGT
dot-bracket secondary structure
((.....)).(((.((((((((..(((.((.((..((((((((((.((((.(((...(((((.(((....))).)))))..))).))))))))..)))))
).....)).)))))..)))))))).))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q40294|AOX1_MANIN: 0.0000000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
