ABOUT THIS RECORDspecies: Quercus robur
miRNA family: MIRf781
source: miRNEST
Taxonomy by NCBI:
Quercus robur Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGATCCCACACATGCATGGCT miRNA* CCCATGTCTGTGTCTTGTCTTT mismatches: 4 bulges: 1 |
pre-miRNA
TCAAAATCTATGGATCCCACACATGCATGGCTTGTTAAAATGAATTTCCATTTTCTGTTTCCATCACTCATATCTCACCAAATTGAGTTATGAGTTAGTG
AAAATGAAAGCAAAATTTTGGTGTTTTTGAGTTATGGAAACAGAGTTACAATGGCATTTTTGTAAATATATTCACATTGTAAGGCCCATGTCTGTGTCTT
GTCTTTTCCTTCAC
dot-bracket secondary structure
...........((((...(((((.(((((((((..(((..(((((..(((((((((((((((((.(((((.....(((((((....(((.((..((.((.
...)).))..)).))))))))))....))))).))))))))))))....)))))...............)))))..)))..))).)))))).)))))...
))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCAAAATCTATGGATCCCACACATGCATGGCTTGTTAAAATGAATTTCCATTTTCTGTTTCCATCACTCATATCTCACCAAATTGAGTTATGAGTTAGTG
AAAATGAAAGCAAAATTTTGGTGTTTTTGAGTTATGGAAACAGAGTTACAATGGCATTTTTGTAAATATATTCACATTGTAAGGCCCATGTCTGTGTCTT
GTCTTTTCCTTCAC
dot-bracket secondary structure
...........((((...(((((.(((((((((..(((..(((((..(((((((((((((((((.(((((.....(((((((....(((.((..((.((.
...)).))..)).))))))))))....))))).))))))))))))....)))))...............)))))..)))..))).)))))).)))))...
))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
