ABOUT THIS RECORDspecies: Quercus robur
miRNA family: miR3948
source: miRNEST
Taxonomy by NCBI:
Quercus robur Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGAGTGGGAGTGGGAGTGGG miRNA* CACTCCCACTTTACCTCACCAA mismatches: 3 bulges: 1 |
pre-miRNA
AAAATGAAAATGGGAGTGGGAGTGGGAGTGGGTCTACATCAACATCACAATGATAAAGAGCTCAAGGCCTCAGACGCTTTGCCACTCCCACTTTACCTCA
CCAATGCTGTCT
dot-bracket secondary structure
..........((((((..(((((((((((((.(((..((((.........))))..)))...((((((.......)))))))))))))))))))..))).
))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAAATGAAAATGGGAGTGGGAGTGGGAGTGGGTCTACATCAACATCACAATGATAAAGAGCTCAAGGCCTCAGACGCTTTGCCACTCCCACTTTACCTCA
CCAATGCTGTCT
dot-bracket secondary structure
..........((((((..(((((((((((((.(((..((((.........))))..)))...((((((.......)))))))))))))))))))..))).
))).........
SIMILARITIES| miRBase cre-MIR1171: 0.00008 PMRD cre-miR1171: 0.00008 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
