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ABOUT THIS RECORD

ID: MNEST002365
species: Raphanus raphanistrum subsp. landra
miRNA family: miR824
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. landra Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTTCTCATCGATGGTCTAGA

miRNA*
TAGACCATTTGTGAGAAGGGG

mismatches: 1
bulges: 0

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pre-miRNA
GACAGGTTCGCTCGAGTTGTCTCTCATGTCTAGACCATTTGTGAGAAGGGGTTTTATAGGTGCACCTCACCAATCTCTAAATGACTAAATATACGATTAG
TATTAGGCTCATATAAGGAAGTTAACTTCTATACATAAAGTGCACTGATGACTTTTCCAGATGCTATATAGATACTTTTTAGAATTAGGTCATGCCAAGT
CTCCAACTCATATATAATCGTATACACTTTTGGACATACATTTTCTCTAAGAGATGCCAAACTTCTGTCTGGAGTGGAGCTTTCTCGTGATAGCTCATAA
TTTGTAGCTTGCACAACTTAAGCTACACTAGTTTACTTGATAAAAAAATTGAGTGGAGTGGGGGGGAGGTGCTGGATTATTTCCCCTTCTCATCGATGGT
CTAGA
TTTGCGAGGTGACTCTAATAGTGGTAA


dot-bracket secondary structure
.......(((((.((((((((((.((.((((((((((((.(((((((((((....((((..(((((((.((..(((.((.((((((.(((((.......)
)))).)).)))).)).)))(((..((((.........))))..))).((((((((((.(((...(((....)))...))).)))..))))))).((....
(((((.((((......((((..((.(((((((((((.......((((...))))...........))))))))((.(((((.((....)).)))))...)
).(((((((((.......)))))))))..))).))..))))........)))))))))..)).)))))))))....))))..))))))))))).))))))
)))))
).)).))))))))))....)))))...



SIMILARITIES
miRBase bra-MIR824: 0.0000000000001

PMRD bra-miR824: 0.0000000000001

microPC no hits
UniProt no hits

RFAM MIR824: 0.000000000002
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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