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ABOUT THIS RECORD
ID:
MNEST002383
species:
Raphanus sativus
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Raphanus sativus
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTTCCTCCGTTTCATAATA
miRNA*
TTACGAAACGGAGGGAGTATA
mismatches:
1
bulges:
0
View larger
pre-miRNA
AGTGATAATAA
TACTTCCTCCGTTTCATAATA
GTTGATGTTTTGGAAGGATAATTTTGTTTCAAATTAGATGAAGTTTTGAGATTTTAAGGTTACTTTAG
TTTTATTGGAAACTGTTCAACCAATTAGATTTTACAGTCTTTTTTATTATTGGTTAATTGATTTTAAAATTATATCTTTAAAATATTTTTTAGTTAAAAA
TACAATTTTCTTAATTTTTGTGCACTATGGTAAAACATCAAGTA
TTACGAAACGGAGGGAGTATA
TCATAACA
dot-bracket secondary structure
.((((((....
(((((((((((((((.(((((
.(((((((((((..((((.((((.(((((..(((((((.((.((((((((((((((((((((.(((((
((((....)))))))...(((((((.(((((....)))))........))))))))).)))))))))))))......))))))).)).)))))))..)))
)).)))).)))).....(((((...)))))))))))))))).))
))).)))))))))))))))))
))))....
SIMILARITIES
miRBase
osa-MIR819j
:
0.00001
PMRD
osa-miR819j
:
0.00001
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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