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ABOUT THIS RECORD
ID:
MNEST002390
species:
Raphanus sativus
miRNA family:
MIRf1147
source:
miRNEST
Taxonomy by NCBI:
Raphanus sativus
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTGAACCGGTCCGGTTTAG
miRNA*
ATACTGTTCGTTCTATATT
mismatches:
4
bulges:
2
View larger
pre-miRNA
AAATTTCAAGTTTCCTCTGCTT
ATACTGTTCGTTCTATATT
TTTCCCAGCTTCATCTACTTCAGTTTCACCATGACTTCTTCTCTTCTTTTCCGGTCAAG
ATCGGTCTACTCATCATATCCATCCTCCTCTACACCGAAGAAACAATCCAATTCATGACGAGGA
TACTGAACCGGTCCGGTTTAG
GAGAGGATACGTACG
CCCC
dot-bracket secondary structure
.........((.((((((.(((
(.((((.((((((..((((
(((..((...............(((((....(((((................)))))..
.(((((.((.....................)).))))).)))))...........))..)))))
))..))).)))..)))).)))
))))))).)).....
....
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q9SS39|KCS14_ARATH: 4e-16
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record