ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIRf146
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCATCTTCTTCTTCTTCGTC miRNA* AGAAGAAGAAGAAGAAGAAG mismatches: 2 bulges: 1 |
pre-miRNA
TTAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAAATCGATTCTTTATCTGGAAATTCAATGGCGGTTTCTTCTG
TAACTTCGTTCATATTACCCTCTTTCGCCAACCTTACATCTTCTTCTTCTTCCACCAAACAGAAAGTCTCTTTGCTTCCATCTTCTTCTTCTTCGTCTAC
TCATGG
dot-bracket secondary structure
....(((..(((.((((((((((((((.((((..((((((((((((((..(((.(((((((.......))))))).((...))..((((((........(
(((...........))))......))))))..)))...))))))))))))))...((((.(((...))).))))))))..)))))))))))))).))).)
))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAAATCGATTCTTTATCTGGAAATTCAATGGCGGTTTCTTCTG
TAACTTCGTTCATATTACCCTCTTTCGCCAACCTTACATCTTCTTCTTCTTCCACCAAACAGAAAGTCTCTTTGCTTCCATCTTCTTCTTCTTCGTCTAC
TCATGG
dot-bracket secondary structure
....(((..(((.((((((((((((((.((((..((((((((((((((..(((.(((((((.......))))))).((...))..((((((........(
(((...........))))......))))))..)))...))))))))))))))...((((.(((...))).))))))))..)))))))))))))).))).)
))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
