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ABOUT THIS RECORD
ID:
MNEST002393
species:
Raphanus sativus
miRNA family:
MIRf20
source:
miRNEST
Taxonomy by NCBI:
Raphanus sativus
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGACTTCGAAGCTGGCTG
miRNA*
GACCTGTTCTGAAGCTCTATC
mismatches:
4
bulges:
2
View larger
pre-miRNA
ACGTTTCCGGTTCCATTCCTA
TGAAGACTTCGAAGCTGGCTG
TGATATGAAAGGTGATCTTTTCGGG
GACCTGTTCTGAAGCTCTATC
TTTGGGACCAAG
CTGCTG
dot-bracket secondary structure
........(((((((.....(
((.((.(((((.(((.((((.
.....(((((((....))))))).)
).)).))).))))))).))).
..)))))))...
......
SIMILARITIES
miRBase
cel-mir-2
:
0.00008
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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