ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIRf100
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTAACCAAACCGAACCGAAC miRNA* TTACTTTGGTTGGATAAATC mismatches: 4 bulges: 1 |
pre-miRNA
ACTAACTATGGTTTACTTTGGTTGGATAAATCATTGAACCGAATTAACCAAACCGAACCGAACCGGAACCGA
dot-bracket secondary structure
........((((((..(((((((((.(((.((........)).))).)).)))))))..)))))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACTAACTATGGTTTACTTTGGTTGGATAAATCATTGAACCGAATTAACCAAACCGAACCGAACCGGAACCGA
dot-bracket secondary structure
........((((((..(((((((((.(((.((........)).))).)).)))))))..)))))).......
SIMILARITIES| miRBase no hits PMRD ptc-miRf11108-akr: 0.0002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
