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ABOUT THIS RECORD

ID: MNEST002402
species: Raphanus sativus
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGTTCGGGAC

miRNA*
TCCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 1

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pre-miRNA
GGGGGGCTCAGATTCGCTTGGTGCAGTTCGGGACTGATTGGCTGACACAACCACATAGGTACTTTTGCCTTATTGGTTTGTAAGCATGGATTGGCTCCCG
CCTTGCATCAACTGAAT
CGGAGCCTCC


dot-bracket secondary structure
.((((((((.((((((.(((((((((..(((((((((((.(((.(((.(((((...((((......))))...)))))))).)))...)))))).)))))
..))))))))).)))))
).))))))))



SIMILARITIES
miRBase ath-MIR168a: 1e-16

PMRD ath-miRf10239-akr: 1e-16

microPC miR168: 7e-18
UniProt no hits

RFAM MIR168: 8e-18
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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