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ABOUT THIS RECORD
ID:
MNEST002402
species:
Raphanus sativus
miRNA family:
MIR168
source:
miRNEST
Taxonomy by NCBI:
Raphanus sativus
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGTTCGGGAC
miRNA*
TCCCGCCTTGCATCAACTGAAT
mismatches:
3
bulges:
1
View larger
pre-miRNA
GGGGGGCTCAGAT
TCGCTTGGTGCAGTTCGGGAC
TGATTGGCTGACACAACCACATAGGTACTTTTGCCTTATTGGTTTGTAAGCATGGATTGGC
TCCCG
CCTTGCATCAACTGAAT
CGGAGCCTCC
dot-bracket secondary structure
.((((((((.(((
(((.(((((((((..((((((
(((((.(((.(((.(((((...((((......))))...)))))))).)))...)))))).
)))))
..))))))))).)))))
).))))))))
SIMILARITIES
miRBase
ath-MIR168a
:
1e-16
PMRD
ath-miRf10239-akr
:
1e-16
microPC
miR168
:
7e-18
UniProt
no hits
RFAM
MIR168: 8e-18
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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