ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGTTCGGGAC miRNA* TCCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 1 |
pre-miRNA
GGGGGGCTCAGATTCGCTTGGTGCAGTTCGGGACTGATTGGCTGACACAACCACATAGGTACTTTTGCCTTATTGGTTTGTAAGCATGGATTGGCTCCCG
CCTTGCATCAACTGAATCGGAGCCTCC
dot-bracket secondary structure
.((((((((.((((((.(((((((((..(((((((((((.(((.(((.(((((...((((......))))...)))))))).)))...)))))).)))))
..))))))))).)))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGGGCTCAGATTCGCTTGGTGCAGTTCGGGACTGATTGGCTGACACAACCACATAGGTACTTTTGCCTTATTGGTTTGTAAGCATGGATTGGCTCCCG
CCTTGCATCAACTGAATCGGAGCCTCC
dot-bracket secondary structure
.((((((((.((((((.(((((((((..(((((((((((.(((.(((.(((((...((((......))))...)))))))).)))...)))))).)))))
..))))))))).)))))).))))))))
SIMILARITIES| miRBase ath-MIR168a: 1e-16 PMRD ath-miRf10239-akr: 1e-16 microPC miR168: 7e-18 | UniProt no hits RFAM MIR168: 8e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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