ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATAGCATCATGAGCAATCA miRNA* ACTGCTCGTGATGTTATATCA mismatches: 1 bulges: 0 |
pre-miRNA
CCAAGTACTTTGTATAGCATCATGAGCAATCAGTCTTGGAAACTCAATTGTTGGTTTCTCATTAAATTGACTGCTCGTGATGTTATATCATTTTCTCT
dot-bracket secondary structure
...........(((((((((((((((((.(((((..(((((((.(((...)))))))).))....))))).)))))))))))))))))..........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCAAGTACTTTGTATAGCATCATGAGCAATCAGTCTTGGAAACTCAATTGTTGGTTTCTCATTAAATTGACTGCTCGTGATGTTATATCATTTTCTCT
dot-bracket secondary structure
...........(((((((((((((((((.(((((..(((((((.(((...)))))))).))....))))).)))))))))))))))))..........
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 1e-28 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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