ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
GTGACAGTTGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTTTTTTGGAAAGAAAGGAAGATAAAAATTAAAAGCATGAACAGATCGATAAA
CCTCTGCATCCAGCGGTTTACC
dot-bracket secondary structure
((((...((((((((.((((.((((.((((((((.(((.((..(((((((.(((............))).))))))).....)).))).)))))))).))
)).)))).)))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGACAGTTGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTTTTTTGGAAAGAAAGGAAGATAAAAATTAAAAGCATGAACAGATCGATAAA
CCTCTGCATCCAGCGGTTTACC
dot-bracket secondary structure
((((...((((((((.((((.((((.((((((((.(((.((..(((((((.(((............))).))))))).....)).))).)))))))).))
)).)))).)))))))).)))).
SIMILARITIES| miRBase ghr-MIR162a: 0.0000000000004 PMRD ghr-miR162a: 0.0000000000004 microPC miR162: 0.0000000000004 | UniProt no hits RFAM MIR162_2: 0.00000000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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