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ABOUT THIS RECORD
ID:
MNEST002449
species:
Saccharum hybrid cultivar CoS 767
miRNA family:
MIR437
source:
miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767
Saccharum hybrid cultivar
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAAGTTAGAGAAGTTTGACAT
miRNA*
GTCAAAACTTTTCTAACTTTGA
mismatches:
2
bulges:
1
View larger
pre-miRNA
TAAGAAACAGCCAATGATACTCCTCCTTTTCTAAAATGCAGGGCGTTTTACTTTTGTCCTAA
GTCAAAACTTTTCTAACTTTGA
ACAATTTTATAGAAAA
ATATATTGACATCTACAATACCAAATAAGCGCACTGTCAAGACATTTCATGGTGGATTTAATGAAGCTAATTTGATGTTTCAGATGTCTGTGCAATGTTC
TATACACAGT
GAAGTTAGAGAAGTTTGACAT
CGGGCAAAAATAAAATGACATACATTTTTGAATGGTTGGGGTAGTATACAATGGACTAC
dot-bracket secondary structure
........(((((.((.((((((.((..(((.((((((.....(((((((.((((((((...
((((((.((((((((((((((.
.......(((((((..
...(((.(((((((..((((.(((((.(((.((...(((...(((...))).)))......))..))).))))).))))..))))))).))).....)))
)))).....)
)))))))))))))))))))..
.)))))))).))))))).....)))))).))).))..)))))).....)).))).))..
SIMILARITIES
miRBase
sbi-MIR437f
:
5e-21
PMRD
sbi-miR437f
:
5e-21
microPC
miR437
:
0.00000002
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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