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ABOUT THIS RECORD

ID: MNEST002452
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIRf75
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCGAGACGAATCTTTTAAGC

miRNA*
TTAATAAATTCGTCTTACGGT

mismatches: 5
bulges: 0

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pre-miRNA
ATGTGCATGGAGCATTAAATATAGATAAAAAAATAACTAATTGCACATTTTGCATGAATTTTGCGAGACGAATCTTTTAAGCCTAATTAGTCCATGATTA
ACCATAATTGCTACAGTAACACACATATGCTAATGACGGATTAATTAGACTTAATAAATTCGTCTTACGGTTTCCAGGCGAGTTATGTAATTAGTTTTTT
TTATTAGTATGCGAACGCCTCTTTCGACA


dot-bracket secondary structure
..((((.....))))...((((.((((((((((..((((((((((...(((((..(((..(((.(((((((((...(((((.(((((((((((.((((((
....))))))...((.((.((......)).)).))..))))))))))).)))))...))))))))).))).)))...)))))...)))))))))))))))
))))).)))).((((.......))))...



SIMILARITIES
miRBase osa-MIR442: 2e-16

PMRD osa-miRf10240-akr: 4e-27

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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