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ABOUT THIS RECORD

ID: MNEST002453
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCAGTTGTTGTCTCAAGCTT

miRNA*
GCTAGAGGCAGCAACTGCATA

mismatches: 1
bulges: 0

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pre-miRNA
TGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCANGTTGTGCAGTTGT
TGTCTCAAGCTT
GCTGCCTCCCTTTGC


dot-bracket secondary structure
.((((((((.((((.((((((.((((((((((((((((((..((((((((((((((((....)))))........))))))))))).).)))))))))))
)))))).)))))
).)))).))))))))



SIMILARITIES
miRBase ssp-MIR444c: 7e-55

PMRD pvi-miR444: 3e-51

microPC miR444: 7e-55
UniProt no hits

RFAM MIR444: 4e-60
most similar mature miRNAs

Identical with: miR444 from microPC (MNEST045131)

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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