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ABOUT THIS RECORD

ID: MNEST002462
species: Saccharum hybrid cultivar SP70-1143
miRNA family: miR827
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGTTGGTGGTCATTTAACC

miRNA*
TTAGATGACCATCAGCAAAC

mismatches: 0
bulges: 1

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pre-miRNA
CTAATGCAGCTCCGAACCTGTTTTGTTGGTGGTCATTTAACCATGCTTCCATCGATGGGTGCATGGTTTATGGCAGAGTGTGATGCCATGAACTCATCAT
GGTCATGCATGTGTGCATGGTTAGATGACCATCAGCAAACATGTTCACGAGGCATGCA


dot-bracket secondary structure
....((((.(((.((((.(((((.((((((((((((((((((((((..((((.(((((((.((((((.(((......)))....)))))).)))))))))
))............))))))))))))))))))))))))))).))))..)))...))))



SIMILARITIES
miRBase ssp-MIR827: 1e-69

PMRD osa-miR827b: 0.0000005

microPC miR827: 3e-64
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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