ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR2019
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCGTCGGCGCTGCACGCGGC miRNA* CGTGAGCCGGCGCCCGATGCCCG mismatches: 2 bulges: 2 |
pre-miRNA
ATCATCTGGGTGGCGTCGGCGCTGCACGCGGCCGTCAACTTCGGGCAGTACCCGTACGCCGGGTACCTGCCGAACCCGCCGCGACCGTGAGCCGGCGCCC
GATGCCCGAGCCCGGC
dot-bracket secondary structure
.....((((((((((((((((((((.(((((.(((....(((((.(((((((((.....)))))).))))))))......))).))))).).))))).))
))))))...)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCATCTGGGTGGCGTCGGCGCTGCACGCGGCCGTCAACTTCGGGCAGTACCCGTACGCCGGGTACCTGCCGAACCCGCCGCGACCGTGAGCCGGCGCCC
GATGCCCGAGCCCGGC
dot-bracket secondary structure
.....((((((((((((((((((((.(((((.(((....(((((.(((((((((.....)))))).))))))))......))).))))).).))))).))
))))))...)))))).
SIMILARITIES| miRBase no hits PMRD tae-miR2019: 0.0003 microPC no hits | UniProt sp|Q76I22|LOX1_ORYSJ: 0.00000000006 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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