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ABOUT THIS RECORD
ID:
MNEST002593
species:
Saruma henryi
miRNA family:
MIR172
source:
miRNEST
Taxonomy by NCBI:
Saruma henryi
Saruma
Aristolochiaceae
Piperales
magnoliids
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGAATCTTGATGATGCTGCAT
miRNA*
GTGGCATCATCAAGATTCACA
mismatches:
1
bulges:
0
View larger
pre-miRNA
AGATCTCTGTAGAGGGAAGCACAGTCACTGTTTGCGGGT
GTGGCATCATCAAGATTCACA
AAACTTTGAAAGGGGGTGTTGAGTGGCAGTGCATGAGATG
AGGTGGTTGTGGATGGTGGCCCCTCACAGTACCCCCTCGAGATG
GGAATCTTGATGATGCTGCAT
CGGCAATAAGTGACTACTTTTTTAAGCTGCAAACC
A
dot-bracket secondary structure
.......(((((..(((((...(((((((..((((.(((
((((((((((((((((((.((
....(((((..(((((((.((((.(((.((.(((((....
......))))).))....))).))))...)))))))))))).))
.))))))))))))))))))))
).))))..)))))))...)))))...)))))....
.
SIMILARITIES
miRBase
ptc-MIR172e
:
0.0000000002
PMRD
ptc-miRf11917-akr
:
0.0000000002
microPC
miR172
:
0.00004
UniProt
no hits
RFAM
mir-172: 0.000000003
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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